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YosefLab
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Hotspot
https://hotspot.readthedocs.io/en/latest/
MIT License
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All zero check
#41
LevyNat
opened
1 month ago
2
All FDRs are NaNs
#40
caitsimop
closed
3 months ago
1
Release a new version
#39
tanliwei-genomics-cn
opened
5 months ago
2
Autocorrelations of subset of genes against all genes
#38
jnmark
opened
5 months ago
0
10x visium data
#37
wangjiawen2013
opened
8 months ago
0
Getting 5 times more gene in a module than `min_gene_threshold`
#36
amissarova
opened
9 months ago
1
Image parameter description
#35
Zhenbin24
opened
9 months ago
0
Question about scalability
#34
smorabit
opened
1 year ago
0
saving hotspot result (hs and module)
#33
parkjooyoung99
opened
1 year ago
1
Running hotspot on integrated data
#32
bbergsneider
opened
1 year ago
3
NB-GAM fitted values
#31
pavsol
closed
1 year ago
2
How to save a Hotspot object for spatial data?
#30
aaadc
opened
2 years ago
0
InvalidIndexError: (slice(None, None, None), (0, 1)) when using sc.pl.spatial
#29
Flyingcattle
opened
2 years ago
1
reproducibility of Hotspot analysis
#28
Polligator
closed
2 years ago
3
ValueError
#27
tongjiezhao
opened
2 years ago
4
fix multiprocessing
#26
jiwen90
closed
1 year ago
5
Run Hotspot without umi-count normalization
#25
TangLabsysu2020
opened
2 years ago
0
create_modules speed up
#24
wangjiawen2013
opened
2 years ago
4
hs.plot_local_correlations() shows nothing
#23
Polligator
closed
2 years ago
2
Sparse distances
#22
adamgayoso
closed
2 years ago
0
spatial distances
#21
wangjiawen2013
closed
2 years ago
4
Add legacy init
#20
adamgayoso
closed
2 years ago
0
Fix dense input array
#19
adamgayoso
closed
2 years ago
0
[Minor bug] add check for np.ndarray object
#18
mrland99
closed
2 years ago
0
Support for pandas data frame
#17
canergen
closed
2 years ago
2
add anndata support, readthedocs
#16
adamgayoso
closed
2 years ago
0
Readthedocs
#15
adamgayoso
closed
2 years ago
1
Use pynndescent for approximate nearest neighbors
#14
adamgayoso
closed
2 years ago
1
add CI
#13
adamgayoso
closed
2 years ago
0
add a parameter`n_jobs` in create_knn_graph()
#12
hanguojun007
closed
2 years ago
1
Question about phylogenetic tree type
#11
tenlives
opened
2 years ago
0
import knn graph?
#10
bjstewart1
closed
2 years ago
5
Can't pickle local object 'compute_hs.<locals>.initializer'
#9
diegoalexespi
closed
1 year ago
6
Return figure in plot_local_correlations
#8
deto
opened
3 years ago
0
Save correlation plot
#7
ccruizm
closed
3 years ago
1
include self edges in gene-gene correlations?
#6
phbradley
closed
3 years ago
3
The initializer allows for improper data types; should type check first
#5
gmstanle
closed
2 years ago
0
Division by zero error in `compute_autocorrelations` when genes are not expressed in any cell
#4
gmstanle
closed
4 years ago
3
Division by zero error in `compute_autocorrelations`
#3
gmstanle
closed
4 years ago
0
License?
#2
flyingrobin
closed
4 years ago
1
Export functions
#1
mbcole
closed
6 years ago
0