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Hi,
I have installed all the requirements and run SJAR in Ubuntu 20.04.
environment: python 3.7.4, Node.js v17.9.0
However, i've been having some issues. The ERROR information is listed below:
【s…
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Greetings,
I'm interested in using calrissian to run CWL workflows on the K8s service for the 3 major cloud vendors. I'm starting with Azure and am running into caveats (e.g. https://github.com/Duk…
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```
Got workflow error
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/cwltool/command_line_tool.py", line 733, in collect_output
raise WorkflowException("Did…
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It is available since CWL v1.0 but its usecase can be covered with [`CommandInputParameter#inputBinding`](https://www.commonwl.org/v1.2/CommandLineTool.html#CommandInputParameter) and [`CommandInputRe…
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Replace cwltool by cwl-utils for parsing of CWL documents as soon as common-workflow-language/cwl-utils#10 is resolved.
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Hello all!
Would it be possible to bump the [ECMAScript version specified for Expressions](http://www.commonwl.org/v1.0/CommandLineTool.html#Expressions) from 5.1 to 6.0? ES6 offers many new featur…
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Update: the latest proposal is at https://github.com/common-workflow-language/cwltool/pull/1629 (specifically see https://github.com/common-workflow-language/cwltool/blob/92c4073bf2e7965587d62abbf0891…
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I have a relatively large workflow that I have created using rabix composer and then exported to YAML using both the command line rabix composer and the Seven Bridges web editor. In both cases I get a…
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I have some serious weirdness that I thought I should document.
I have a small HPC; head node, 6 compute nodes, compute nodes mount /share/apps /home from head node. I have metaGOflow installed in …
cymon updated
1 month ago
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If stdout or stderr get passed as values to `cwltool.main.main`, the expected behaviour doesn't happen e.g. in the following, in python 3:
```python
import cwltool.main
import io
stream = io.Str…