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hi, I'm confused about the condition here. in the log of funannotate predict, I saw that the the value of 'augustus' is set as 'pasa', while it was set as 'busco' in many other people's logs. I checke…
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I've used the latest github version (Dec 14 2020) and my goal is to run ICGS2 clustering. I've created two versions of input counts - one is plain tsv file (called 'tsv' below) and the other a directo…
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Hello,
following this issue:
https://github.com/wheaton5/souporcell/issues/179
minimap is used in souporcell pipeline like:
https://github.com/wheaton5/souporcell/blob/master/souporcell_pipel…
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Hi, I am running QoRTs 1.2.26 on whole genome DNASeq BAM files. The BAM has around 138mil x2 PE 150nt reads mapped using BWA aligner. I initially gave it 8 cores and 64GB RAM and it failed. Then I gav…
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The pagination is broken (see images below) after applying the taxon filter in some cases. This seems to happen in cases where you deselect species but the total number of associations to display afte…
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Hi all,
Thank you very much for such a great tool!
I faced an issue when I was trying to run run_scenicplus:
```
>>> try:
... run_scenicplus(
... scplus_obj = scplus_obj,
... …
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the GlyGen team had a meeting and decided on the next species we would like to add to GlyGen over the next few releases:
* Bovine (2.7)
* Zebrafish / Hamster (2.8)
* Rice (2.9)
The number in par…
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Seeing lots of these - any ideas? v0.9.1
```
ERROR [processor_job: 399381] [pipeline_applied: SALMON] [no_retry: False] [failure_reason: Shell call to salmon failed because: ### salmon (
### [ pr…
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I'm developing the 3.0 version of the monarch ui/website, and I've run into a limitation. @putmantime
Here is an example response from the `/search/entity/{term}` endpoint, searching "ssh":
```…
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PTHR10003 Info - IBA to term GO:0005507 for node PTN002224320 with species Mycobacterium tuberculosis negates 'NOT' experimental evidence for term GO:0046872.
PTHR10890 Info - IBA to term GO:0004817 …