-
it would eventually be nice to have code that takes adjusted coverage, derfinder results, and the genome-wide F-statistic used to find the DERs, and automatically create a UCSC Track Hub. Other inputs…
-
Hi all,
I'm writing to inform that `derfinder` is not passing check on `morelia`, the Mac OS X machine.
Please see the report at:
http://bioconductor.org/checkResults/3.4/bioc-LATEST/derfinder/mor…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LieberInstitute/recountWorkflow
Note that this pa…
-
something in VariantAnnotation broke our package :(
```
> library(derfinder)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/jhpce/shared/community/compiler/gc…
-
Hi @lcolladotor,
Refer to the issue below:
leekgroup/derfinder#17
-
Hi, I noticed that the names of the columns in the row data table for a RangedSummarizedExperiment object seem to be inconsistent with the data in the columns of the table, unless I am misunderstandin…
-
I have been trying to download the following GSE73721 dataset (a dataset that features on the recount website) but cannot using recount library.
Below is the list of relevant commands I ran in the …
-
Hi,
@ShanEllis found a bug in the TCGA metadata. Basically, a column has a mixture of data. She also found that by re-running https://github.com/leekgroup/recount-website/blob/master/metadata/tcga_…
-
Hi,
Currently this fails in `derfinder`:
```
> library('derfinder')
>
>
> prep regs1 packageVersion('derfinder')
[1] ‘1.5.29’
> packageVersion('bumphunter')
[1] ‘1.11.3’
> R.version.string
[1] "…
-
Hi,
The latest build reports for [`regionReport`](http://bioconductor.org/checkResults/devel/bioc-LATEST/regionReport/malbec2-buildsrc.html) and [`recount`](http://bioconductor.org/checkResults/dev…