-
This would be useful both for GO-Rhea, but also for complex dosdp workflows.
Possibly implement as a robot command? Or specific to dosdp?
Inputs: two ontologies (src, tgt) plus configuration tha…
-
We made the decision that the susceptibility terms should be a child fo 'inherited disease susceptibility' and follow the pattern: https://github.com/monarch-initiative/mondo/blob/master/src/patterns/…
-
We have many cases where we manually maintain partonomies between Uberon and BP (most notably under the development branch, and between CC and BP (most notably in the organization branch). Ideally we'…
-
- [ ] Import [`calcifiedAnatomicalEntityWithCalcificationPattern.yaml`](https://github.com/obophenotype/human-phenotype-ontology/blob/master/src/patterns/dosdp-patterns/calcifiedAnatomicalEntityWithCa…
-
We would like to tag classes with meta categories, both to make it easier to test certain assumptions (e.g. no diseases should be both defined to be caused by different genes and be in a subsumption r…
-
Two classes appear to both have the label "abnormality of anatomical entity physiology":
UPHENO:0002332 and UPHENO:0082875.
![image](https://github.com/obophenotype/upheno-dev/assets/7987729/b3bfc…
-
@matentzn cc @ddooley @ramonawalls @cooperl09 @cmungall @diatomsRcool @LilyAndres @CropStoreDb
Thanks @matentzn for outlining the ongoing efforts to model patterns for traits and phenotypes [in th…
-
To support interoperability, semantic artefacts should be designed based on well-supported patterns whenever relevant and possible. These patterns should be documented and published as a resource for …
-
Pertains to #901
- [ ] form of ensembl URIs. The slash form is more canonical ie https://identifiers.org/ensembl/ENSMUSG00000019772 not https://identifiers.org/ensembl:ENSMUSG00000019772. Also in…
-
To lower barriers to template creation and editing, we developed a term template specification system (Dead Simple Ontology Design Patterns; DOSDPs) [63]. This approach has worked well, but debugging …