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https://bioentity.link//#/publication/10.1093/g3journal/jkae122
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- [x] do a simplest simulation under degree-corrected SBM.
- [x] analyze c.elegans data using AME method.
- [x] Present a simulation where MGC is much better than AME.
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Need to make sure there is a stage term that encompasses range of stages after embryo and before adult stage. To support expression data for C. elegans to mammals.
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255229 Det 1 Vervain urticifolia
255243 Det 1 Vervain angustifolia
255245 Det 1 Echinospermum lappula
255268 Det 1 Pontederia angustifolia
255328 Det 1 Fimbriaria elegans
255344 Det 1 Actaea spic…
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- [ ] https://github.com/obophenotype/upheno (not possible due to https://github.com/obophenotype/upheno/issues/919)
- [ ] https://monarchinitiative.org/ (not possible due to https://github.com/monar…
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Might be relevant for the OpenWorm folks...
https://osf.io/mw5zs/
cc @slarson, @tarelli
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This is separated into:
- [ ] #112
- [ ] #113
- [ ] #114
travs updated
5 years ago
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Say if we have several image tiles captured purely by hand for a C.elegans body. These images are positioned along the body of the insect with various and not uniform image-overlap, so it is not the m…
rmd13 updated
5 years ago
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A phylogenetic profiling approach identifies novel ciliogenesis genes in Drosophila and C. elegans PMID:37317646
https://pubmed.ncbi.nlm.nih.gov/37317646/
Looks like a good resource to make a larg…
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In reviewing a number of our C. elegans transcription factor annotations, I see that they are getting annotations to both:
'transcription, DNA-templated' GO:0006351 via KW-0804
and
'regulatio…