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Hello MerenLab,
While at EBAME I was encouraged to open this discussion by @FlorianTrigodet and @ivagljiva, and bring it to @semiller10's attention.
DNA methylation is on the verge of constituti…
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Noticed this while reading a news post on my phone: https://www.embl.org/news/science/new-insights-into-epigenetic-modifications/
![image](https://user-images.githubusercontent.com/928100/84363587-…
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Please provide as much information as you can:
There may be a reason why we do not have this term, but I can't remember what it is.
I need it to annotate epe1
https://www.pombase.org/reference…
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Hi @davek44
we have ATAC-seq data in different tissues and we want use the basenji to predict the activaty of snps. We wonder we put all the ATAC-seq in different tissues togother to the bsenji for…
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A search over the Top Medical 1000 reveals 400 whitelisted DOIS
complete list here: https://github.com/wpoa/OA-signalling/blob/master/cite_doi_analysis/med1000_whitelisted.csv
The top 20 with the mos…
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Hey, first of all this is a really cool project!
Are you interested in including researched optimal ranges for the biomarkers in the Readme? IMO the spreadsheet is not ideal, because it is not access…
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Hi,
Thanks for your outstanding work. I am running the package in our own data but I got this error in "Select epigenetic features for SNV/indel" step.
[1] "Progress : 95/100"
[1] "Progress : 9…
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# 1. 可能是 ATAC-seq 方法的原始文献 (nature methods, 2023)
https://www.nature.com/articles/nmeth.2688
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-bi…
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Hi,
I tried using `--genome` in PLINK to calculate IBD based on a selection of SNPs (in my case 44). Turns out, that in my data:
- 7 SNPs have haploid genotypes
- when merging GWAS data of the sa…
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Crowd source a lab list.
https://twitter.com/FlyBaseDotOrg/status/1669076003296010242
Will be useful for a number of purposes.
We will probably use a Google Doc with contraints.
Suggested fiel…