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Example ribbon from FlyBase - https://flybase.org/reports/FBgn0050446
Idea is ribbon of squares with heat map colours and text for each square.
For now:
Badges are currently mostly neurotransmi…
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https://monarchinitiative.org/gene/FlyBase:FBgn0014445
FlyBase assigns this to be a Scer (yeast) gene, which is of course correct
But this means that we end up with 6 "yeast genes" with nervous syst…
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https://www.ebi.ac.uk/ols/ontologies/caro/properties?iri=ttp%3A%2F%2Fwww.geneontology.org%2Fformats%2FoboInOwl%23created_by
see also: https://github.com/FlyBase/flybase-controlled-vocabulary/issu…
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It is worth exploring whether there are better alternatives to insect KEGG pathway annotation than KOBAS since when we developed the pipeline ~5 years ago.
General considerations:
- have other dat…
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##### Description of the problem
Missing pubs (and stage) on expression reports
e.g.
![image](https://user-images.githubusercontent.com/112839/89522762-a4bdd200-d7d9-11ea-9d81-fb417a8cc18a.png…
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http://localhost:4200//#/publication/10.1093/g3journal/jkaa016
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http://localhost:4200//#/publication/10.1534/genetics.119.999934
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Seems like "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity" (GO:0033842) should be a child of "beta-1,4-N-acetylgalactosaminyltransferase activity" (GO:00332…
sjm41 updated
1 month ago
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Recently, I used piPipes step by step using data in manual, I ran the small RNA-Seq part:
piPipes small -i Zamore.SRA.ago3_het.ox.ovary.trimmed.fastq.gz -g dm3 -o Zamore.SRA.ago3_het.ox.ovary.piPipes…
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https://bioentity.link//#/publication/10.1093/g3journal/jkae149