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+ Gene ontology
+ Publications/References
+ Strains and Phenotypes
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I am interested in adding introns in my genome annotation mygenome.gff3.
After running the command below, I obtain an output genome_with_introns.gff3 in which there is no "intergenic_region" annotat…
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**Describe the bug**
When running the command, it gets towards the bottom of the process but then errors saying the it could not open the index file. This is a resulting GFF file from MAKER output.
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Dear all
I can’t plot the GO termns due to the Trinotate.xls report includes separated GO term columns called "gene_ontology_BLASTX", "gene_ontology_BLASTP" and "gene_ontology_Pfam".
Therefore, …
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Hi Tobias,
Thank you for creating the ITAG4.1 GO annotation for tomato! This is a valuable resource for the plant research community.
I am currently using your annotation to perform GO enric…
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We want to load the `biosampleIndex` that @Tobi1kenobi has created in #3445. Actions:
- [x] Create a version of the dataset in JSONL (pyspark `write.json`)
- [x] Provide the schema of the dataset in …
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We are looking to have more specific ontology terms for Visium, as 10x has come out with variations of the assay. Here is some documentation regarding the version of the slide in the slide serial numb…
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We have a term that was added in #5261
```yaml
id: MONDO:0800145
name: non-severe combined immunodeficiency due to polymerase delta deficiency
def: "Any non-severe combined immunodeficiency in w…
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Either find or create terms for all HGNC gene locus types that can be used to annotate all genes in HGNC:
- [x] Fragile site https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/301
- [x]…
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### Description
An experiment that executes GADO prioritisation with these parameters _(Note: the file paths are just for example purposes)_:
Process Command
```bash
java -jar GadoCommandlin…