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Hi, and thanks for a great tool! We're using this to show genetic variants in a gene region. Since those tend to be clustered, it's common that the labels overlap. It would be greatly appreciated if y…
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For example, the RVIS measure from Petrovski et al [1] assesses a gene's intolerance to genetic variation based on the ESP project. I also recall a poster from Mark Daly's lab at Biology of Genomes t…
arq5x updated
10 years ago
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So that multiple people can collaborate on a shared variant list.
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I am running phase_common on a BCF file (as well as variants to exclude in another BCF) acquired from an Axiom array.
While running, it gives an error stating that `AC field is needed in file` for …
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Hi, I've encountered a warning and error in rvtests log when I try to conduct a GWAS. My code looks like this:
```
./software/rvtests/v2.1.0/executable/rvtest \
--inVcf ./derived_data/genetic_d…
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Hi Florian, thank you for a great package! I think it would be very useful if `snp_simuPheno` could be extended to simulate multiple genetically correlated phenotypes. I guess the framework could be m…
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Elinor Karlsson and Kerstin Lindblad-Toh are coming out with a big Science paper package at the end of April describing their recent work developing base-pair-resolution constraint by doing comparativ…
gtiao updated
4 weeks ago
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I noticed while making one of my custom lists that the tool doesn't always seem to pick the canonical transcript.
I made [this list](https://genie.broadinstitute.org/variant-lists/0e40430f-3b75-4…
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**Background**:
- [Genome Nexus](https://www.genomenexus.org/) is a comprehensive resource integrating variant annotations from more than a dozen sources relevant to cancer. The annotations can be a…
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Hi!
I am opening my previous ticket again! Once more I listened to some talks in ESHG Vienna and I believe we should have these tools implemented in our analysis pipelines.
As I mentioned previ…