-
Greetings I'm running a syteny analysis on multiple genomes.
#Context: I'm studying the overall synteny among multiple assemblies of a eukaryotic organism, First I took 1 assembly of each species an…
-
I would like to ask how Trust4 can directly analyze paired-end .fastq format data from the 10X Genomics platform for single-cell analysis, instead of analyzing BAM format data. Can you provide support…
-
Dear Dr. Davis JT,
I hope this message finds you well. My name is Daichunyan, and I am a student working in at NORTHWEST A&F UNIVERSITY. I recently came across your outstanding article titled "Whole-…
-
### Description of the bug
Hi,
I encountered an issue while running the pipeline with data generated using the nf-core/RNAseq pipeline. Specifically, when attempting to run the gprofiler analysis wi…
-
### Ask away!
This is my first time running this workflow and my DGE analysis tsv files (for example results_dge.tsv) aren't incorporating the gene names in the gene_name column. Instead, the files d…
-
I've encountered two issues when using the package:
1. Missing Sample Prefix in Output Files:
Our output files do not include a sample prefix, which makes an error when reading the feature_slice.h…
-
**Context**
Similar to download a subset of metadata, we want to use this to extract a subset of genome sequences for further analysis. This might not be helpful or allowed in the global nextstrain…
-
Hi again,
I looked like it was working alright, but then I got the error below.
==> Unable to find image 'nanozoo/python_ribap:3.7--33a36cd' locally
Any ideas?
Thanks!
```
shlomo@shlomo-HP-Z84…
-
I set option `--tmp` in `confindr`, the full command is
```
confindr -i input_dir -d database --rmlst -tmp tmpdir -o output_dir
```
But it seem not to save genus-specific databases to temporary …
-
Thanks for developing this method. I've run into a potential bug where Ne estimates are different depending on the input file. I'm happy to share example files if that is helpful.
In short, given t…