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OLC-Bioinformatics
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ConFindr
Intra-species bacterial contamination detection
https://olc-bioinformatics.github.io/ConFindr/
MIT License
22
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8
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Add to GRDI-AMR.com
#60
chapb
opened
2 weeks ago
1
ConFindr error with trash data
#59
happykhan
opened
4 months ago
1
Missing PercentContam in cgMLST mode
#58
gputzel
closed
6 months ago
1
Didn't save genus-specific databases to temporary directory
#57
chen1i6c04
opened
7 months ago
0
Can't get oauth_verifier
#56
chen1i6c04
closed
7 months ago
3
Error installing DB
#55
shlomobl
opened
8 months ago
1
Fix parsing of FASTQ files with adapter sequences in headers
#54
pcrxn
opened
8 months ago
0
Add Biocontainers Docker image to README and documentation
#53
pcrxn
opened
8 months ago
0
KeyError
#52
jonathho
closed
8 months ago
9
Docker Image
#51
MrTomRod
closed
8 months ago
4
Fix CircleCI testing
#50
pcrxn
closed
1 year ago
0
KeyError when running ConFindr v0.8.1 on test dataset
#49
pcrxn
closed
1 year ago
2
Circleci project setup
#48
pcrxn
closed
1 year ago
0
v0.8.1
#47
pcrxn
closed
1 year ago
0
Error while downloading cgMLST
#46
ryobon-dev
closed
1 year ago
2
Error while running confinder
#45
ryobon-dev
closed
1 year ago
3
E. coli db issue
#44
elina2410
closed
1 year ago
2
confindr_database_setup
#43
joergFLI
closed
1 year ago
4
Error when running ConFindr on unusual oganisms
#42
cjdgug
closed
1 year ago
9
Issues setting up DB
#41
juliofdiaz
closed
1 year ago
9
Error while running kma
#40
rafalkolenda
closed
1 year ago
5
Wrong phred score base with low quality Nanopore data
#39
duceppemo
closed
1 year ago
2
bbtools error
#38
annacorreia
closed
1 year ago
3
Bump numpy from 1.21.0 to 1.22.0
#37
dependabot[bot]
closed
1 year ago
2
Running ConFindr with weird internet access
#36
lskatz
closed
1 year ago
2
Hardcoded path to refseq.msh does no exists
#35
bjhall
closed
2 years ago
1
Bump numpy from 1.15.1 to 1.21.0
#34
dependabot[bot]
closed
2 years ago
0
Request details on programmatic database setup for confindr
#33
bala-ruokavirasto
closed
10 months ago
5
problem installing the rMLST database with confindr 0.7.4
#32
ysevel
closed
1 year ago
7
Save access token to permit automation database download
#31
braffes
closed
2 years ago
0
ConFindr :: problem with bbtools
#30
EricDeveaud
closed
1 year ago
16
DB indexing (samtools, kma):: DB location not writable
#29
EricDeveaud
closed
1 year ago
5
rMLST databases are not freely available
#28
kjolley
closed
2 years ago
0
problems with confindr rMLSt database
#27
KasiaTluscik
closed
1 year ago
4
SamtoolsError
#26
mdabalkey
closed
1 year ago
2
Installation errors using conda/bioconda
#25
ajkarloss
closed
3 years ago
3
Bump py from 1.5.2 to 1.10.0
#24
dependabot[bot]
closed
2 years ago
0
Trimmed or Untrimmed reads?
#23
vappiah
closed
3 years ago
2
Single-end/Paired-end results discrepancies
#22
fredericQC
closed
1 year ago
3
Error when attempting to run ConFindr on sample
#21
connerse
closed
1 year ago
3
ConFindr conda install dependencies can't be solved
#20
crashfrog
closed
1 year ago
2
input fasta
#19
mdabalkey
closed
3 years ago
8
Error when running confindr.py
#18
anacristinareis
closed
1 year ago
2
Keep running when rmlst.fasta is empty
#17
duceppemo
closed
1 year ago
1
KMA issue
#16
Lcornet
closed
1 year ago
3
PackagesNotFoundError
#15
wjidea
closed
5 years ago
2
kma exit status issue
#14
pkmitchell
closed
5 years ago
5
Develop non-rMLST databases for priority pathogens
#13
lowandrew
closed
5 years ago
1
Problems with confindr 0.5.1 install via conda
#12
antunderwood
closed
5 years ago
2
Error: Encountered error when attempting to run ConFindr on sample X. Skipping...
#11
ammaraziz
closed
5 years ago
3
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