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Apparently most browsers have 2083 characters limit for the URL. If a gene model has 10 chars (approx.), the limit will be reached with a list of roughly 200 neighbors. Any work around, now that nei…
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I like the `Wiggle` object a lot. I tried modeling wiggle data by creating length-1 `Feature` objects in the ADAM schema, but it's obviously less efficient.
One issue, though, is that performing int…
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_From @TomKellyGenetics on September 1, 2015 23:18_
Hi team, I thought this would be a good space to start planning ideas for SYSKA topics to gauge interest in various things we could do... and find …
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The new great Blast service at BV-BRC generates a downloadable output CSC or text table, but it is empty. I checked any times
![empty_blast_output_BV-BRC](https://user-images.githubusercontent.com/…
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I'm using JBrowse 1.11.4, with FireFox 31. I have a set of CanvasFeatures tracks with a custom onclick handler that looks like:
```
"onClick" : {
"action" : "newWindow",
"url" : "function(track…
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Thanks for your great work! I am a grad student in Anshul Kundaje's lab and would like to propose adding the dynseq track to IGV which we have discussed briefly with @jrobinso on some of the ENCODE ca…
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Proposal is to formally include
* oio:inSubset - annotation property that connected a term to a subset
* oio:Subset - subset definition
in OMO
Note the way @dosumis and I chose to model su…
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The team should check out this article, especially @NAnguiano and @anuvarsh.
[Kumar, S., & Dudley, J. (2007). Bioinformatics software for biologists in the genomics era. Bioinformatics, 23(14), 171…
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## Problem
The current strategy of serializing `JannovarData` makes it hard to manually edit the available transcript data. For example, to improve annotation speed and memory footprint one could ima…
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Hi dear,
firstly thank you for providing Deepsignal. I am wondering how can ı visualize the output of Deepsignal? could you offer any package or guideline in order to visualize the output data? Als…