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I have a sequence of `27bp length`, and I want to find out the `exact match of this sequence, and all the sequences that have 1 mismatch and 2 mismatch`, by the method of graph.
I used `bowtie1` to…
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Will the reference sequence be considered later from linear genome to graph genome?
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### Description of the bug
Hi, I'm trying to use Sarek from the annotation step. I'm using Linux and Conda. Each time I try, it gives me an error like this:
ERROR ~ Error executing process > 'NFCO…
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- Graph construction was implemented using `rustworkx` in #234, I want to mention that the `rustworkx` python interface is remarkably optimized. Using Python, we can build all graph-downstream analyse…
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Thanks for your wonderful tools!
I have a collection of viral genomes (~6000 strain genomes, length=10000 bp per genome) and I am using vg to build a vg graph with these genomes. I have used tw…
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The idea would be, something like:
for node A, has attributes MIC_AMP_1: some number of genomes, MIC_AMP_2: some number of genomes.
We could do this after the fact to by going through the graph…
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Hi,
I'm trying to run GraffiTE in the mode that bypasses the SV calling steps but it seems to get stuck at the tsd_prep step. I was wondering if you had any idea why?
```
Loading nextflow/23.04…
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Hi,
1. What you were trying to do
I was trying to install and run vg on our institute's Linux workstations. Compiling from source ran smoothly. Then I ran:
```
vg construct -r chr10.fa -v varian…
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Hi,
I have a question of purge dups output.
![image](https://user-images.githubusercontent.com/66449329/93924378-80568000-fcc9-11ea-8f63-57f71a525157.png)
The left graph is a genome assembl…
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Just an issue to collect any relevant papers. For example, there's a whole Genome Biology issue on graph genomes at
https://www.biomedcentral.com/collections/graphgenomes (also see "Pangenome Graph…