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http://kipoi.org/
> Kipoi (pronounce: kípi; from the Greek κήποι: gardens) is an API and a repository of ready-to-use trained models for regulatory genomics. It currently contains 1709 different mo…
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Two comments about this section
1. In the original lesson, there was not a separate section on writing scripts, but the content was naturally achieved when we needed to write the shell script usin…
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In the paper and implementation you add noise to the genetic component of the phenotype to reach a desired heritability using:
> g' = h * g + sqrt(1-h^2) N(0, 1), where h = heritability
There ma…
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We currently use the formula: `alt reads / read depth` but a user asked if we shouldn't instead use `alt reads / (ref reads + alt reads`).
Please note that the e formulas can return very different …
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As discussed in https://github.com/Clinical-Genomics/cg/issues/3197, it'd be good to have an easier method for deleting samples a la `gens delete sample`.
Once implemented in Gens, it'd probably be…
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Thank you for your interest in developing and sharing lesson materials! To submit lesson materials or suggest a topic for future curricular development, please answer the questions below. Our Curricul…
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https://github.com/sa-lee/plyrangesWorkshops with @lawremi
(in the process of updating for 2019)
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https://redmine.apidb.org/issues/31075
EUPATH_0005001 BIIT test
EUPATH_0005002 Parental and Colon
https://redmine.apidb.org/issues/31466
EUPATH_0005006 VNI subdivision
EUPATH_0005005 genetic li…
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Hello,
I want to install glimmer-mg but I don't know where I'm suppposed to indicate the path to the Refseq library I already have on my server?
Thank you
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From https://github.com/Clinical-Genomics/scout/issues/1460