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Hi,
I was wondering the way to avoid filtering the entire menu when clicking on a facet value.
For example, the browser we're setting up: [http://popfly.uab.cat](http://popfly.uab.cat)
For the …
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Variant page feedback points from EMD (from discussion with Carlos):
- [x] Ensembl link at the top of page: is it possible to take the user directly to the variant page instead of the search result…
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One of the goals of the project, after we get an model working enough, is to be able to feed into the model "random sequences" for the model to be able to predict function. This serves two purposes: 1…
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Hello,Professor
I downloaded the TOGA result file for several species from https://genome.senckenberg.de/download/TOGA/mouse_mm10_reference/Rodentia/. I focused on a gene ENSMUSG00000057170 and the …
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We have known for a while that simple client can be used against a GA4GH service to create a beacon service (https://github.com/kozbo/Beacon-on-GA4GH-API). However, there are some confusing mismatches…
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Examples:
-srr srr000218, srr000219
-srp srp000323
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Identify all (meta)genomic datasets that meet certain environmental measurement thresholds (e.g. all samples at X°C, with Y nitrate concentration, Z phosphate concentration)
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Proposal:
Flags
--calculateShardSizeBasedOnCoverage (default true)
--basesPerShard (overrides if above is false)
Reads
- get coverage stats
- throughput ~= 1M reads / second / stream (dependent on i…
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Hello. I am getting the following KeyError message:
> @ 2020-08-09 09:47:32: Read the chain file: GRCh38_to_GRCh37.chain.gz
@ 2020-08-09 09:47:34: Updating contig field ...
@ 2020-08-09 09:47:34…
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The design pattern in the API is that object linkage is done by id, not by
name.
The Position object uses referenceName rather than referenceId.
This should be corrected or the rationale for this …