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### **Description**
**Sub-lineage of:** FL.1.5.1
**Earliest sequence:** 2023-9-11, Haiti — EPI_ISL_18360180
**Most recent sequence:** 2023-10-6, Haiti — 2 sequences
**Countries circulating:** Hai…
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### **Description**
**Recombinant of:** JN.7 (BA.2.86.1.7) and HK.26 (EG.5.1.1.26)
**Earliest sequence:** 2023-11-27, Denmark — EPI_ISL_18617579
**Most recent sequence:** 2023-12-18, Denmark — EPI_…
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**Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/996**
### **Description**
**Sub-lineage of:** FL.1.5.1
**Earliest sequence:** 2023-9-11, Haiti — EPI_ISL_18360180…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1116
Finds this interesting branch with interesting mutations(1 reversion Orf1a:R135S and 1 2-nuc mutation N:13 P->L->F) and goo…
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### **Description**
**Sub-lineage of:** XBB.2.3.3
**Earliest sequence:** 2023-7-30, Netherlands, Noord-Brabant — EPI_ISL_18098305
**Most recent sequence:** 2023-8-13, Netherlands, Noord-Holland — E…
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JN.2+T1030C+C11195T, C23277T,G28346T(Orf1a:L3644F,N:G25C,S:T572I )
GISAID query: C11195T, C23277T,G28346T
No. of seqs: 19(Denmark 2 Belgium 1 Sweden 1 Germany 2 UK 1 Netherlands 12)
First: EPI_…
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- [x] GISAID using their CLI API
- [x] NCBI - BioSample
- [x] NCBI - Genbank
- [x] NCBI - SRA
- [x] NCBI - Table2asn
cc: @leebrian @rchau88 @kristinelacek
nbx0 updated
10 months ago
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**EDITED**: _This was first spotted by @ryhisner in https://github.com/sars-cov-2-variants/lineage-proposals/issues/400 , then it seemed dying off until @JosetteSchoenma rediscovered it and analysed i…
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Intro **i think the original proposal should be updated in this way** (_Edited and Updated_ BY MOD): I would like to recapitulate current situation looking at the downsampled tree:
https://nexts…
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Dear @nextclade team,
if the qc.overallStatus of my sequences are bad, should we remove them for next step analysis?