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> dreep.data
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Hello I am just a beginner, I was reading the clusterProfiler documentation and found a question what is the difference between GSEA() and gseKEGG(), I tried to google but didn't get the answer I want…
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A Wilcoxon rank-sum test is near equivilent to the GSEA method for set activity enrichment (see the fantastic paper (Gene set enrichment analysis made simple)https://www.ncbi.nlm.nih.gov/pubmed/200483…
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I've noticed `GSEA` spawns ~ 2-12 `rsession` subprocesses with 2 threads each. Roughly every other time I try to run a loop of 200 GSEA analyses, GSEA hangs (~4k genes, %
tidyr::unnest()
y sess…
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Hi,
First off, thank you very much for porting the GSEA workflow to R, very useful tool.
I am having an issue that I have not ran across before after using the package successfully for ~2months.…
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Hi there, I am learning to carry out scRNA-seq data analysis with your dataset and workflow as is described in the paper. My question relates to the `20220209_edgeR_inCluster_byCell_GSEA.r` file.
A…
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**Describe the bug**
Building GSEA.jl on Windows 11: https://github.com/KwatMDPhD/GSEA.jl/ fails with
```
[ Info: PackageCompiler: Done
✔ [04m:04s] PackageCompiler: compiling incremental system…
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- [ ] Exportar os valores GSVA e GSEA usando `write_rds()`;
- [ ] Criar um Rproj novo;
- [ ] Checar pacotes;
- [ ] xgboost, rpart, ranger, kernlab,kknn;
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Dear alegiac95,
Thanks for providing this great scripts! I am using this toolbox in my project but meeting a bug.
After PLS analysis, I obtained .pkl file.
When I did imt_gsea (below),
`imt…
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Also requested here https://github.com/MaayanLab/blitzgsea/issues/7
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> Is there any chance that you can implement DGSEA in python as part of your package?
> https://academic.oup.com/bioinformati…