adamsardar metaDEGth issues

adamsardar / metaDEGth

metaDEGth: meta-analysis of Differentially Expressed Genes using parametric, empirically-derived P-value distributions

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Use S7 classes

#38 adamsardar opened 1 year ago
0
Compare against gamma distributed p-values

#37 adamsardar opened 1 year ago
0
Bug in plot method

#36 adamsardar opened 2 years ago
0
Explore Storey and Tibshirani (2003) paper

#35 adamsardar opened 2 years ago
0
Add example of use to README

#34 adamsardar opened 2 years ago
1
Restore working build

#33 adamsardar closed 2 years ago
0
Use GH actions to enable CI pipelines

#32 adamsardar closed 2 years ago
0
Migrate to github actions

#31 adamsardar closed 2 years ago
0
Switch from expoRkit to rexpokit

#30 adamsardar opened 2 years ago
2
KEGG-related disease datasets

#29 adamsardar opened 2 years ago
0
Explore TTD as a source of validation data?

#28 adamsardar opened 3 years ago
0
Incorporate knockTF as validation data

#27 adamsardar opened 3 years ago
0
Migrate to github actions

#26 adamsardar closed 2 years ago
0
Use tinytest

#25 adamsardar opened 4 years ago
0
Explore paradox as a validator strategy

#24 adamsardar opened 4 years ago
0
Add a method for betaUniformModel objects that accepts a table of geneSets

#23 adamsardar opened 4 years ago
1
Explore ways to speed up the phase-type test

#22 adamsardar opened 4 years ago
5
Look in to RNAi as validation set

#21 adamsardar opened 4 years ago
0
Look for improvements to the Welch-Satterthwaite Approximation

#20 adamsardar closed 4 years ago
3
Add summary and table methods for BetaUniformModel object

#19 adamsardar opened 4 years ago
0
Use optimx rather than optim() for the model fit

#18 adamsardar opened 4 years ago
3
Study Ancona et al. for validation sets

#17 adamsardar opened 5 years ago
1
Incorporate validation data: GSE61254

#16 adamsardar opened 5 years ago
0
Incorporate validation data: GSE37699

#15 adamsardar closed 4 years ago
1
Explore work on extensions to Fisher's method

#14 adamsardar opened 5 years ago
0
A general clean up of function names. Think about BioConductor style package.

#13 adamsardar opened 5 years ago
3
Perform checks for other P value distributions

#12 adamsardar opened 5 years ago
0
Incorporate validation data: peturb-seq/CRISPR-seq (GSE90063)

#11 adamsardar opened 5 years ago
1
Incorporate a more adjustable FDR correction

#10 adamsardar opened 5 years ago
0
Add a more detailed README

#9 adamsardar opened 5 years ago
0
Create first minimal version of package

#8 adamsardar opened 5 years ago
2
Incorporate some pathway sets

#7 adamsardar closed 4 years ago
6
Add a source of transcription factor regulons

#6 adamsardar closed 4 years ago
2
Compare against GAGE

#5 adamsardar opened 5 years ago
0
Compare against Wilcoxen/GSEA method

#4 adamsardar opened 5 years ago
1
Compare against Quaternary Product method

#3 adamsardar opened 5 years ago
1
Incorporate validation data: GSE74355

#2 adamsardar closed 4 years ago
1
Incorporate validation data: GSE100118

#1 adamsardar opened 5 years ago
2