-
I've noticed that around 30% of German sequences submitted to GISAID from Germany via RKI suddenly have spurious mutations:
- G7160T
- G1296T
And often also a few of the following:
- T27138A
- …
-
In today's uploads from RKI, I noticed some Delta sequences with collection date just a week ago that have far too few mutations.
It appears that the collection date is incorrect - one would not fi…
-
*[note] This was proposed in #860, but creating this issue for discussion tailored to the de-duplication task.*
## Context
Currently, the ncov workflow has scripts for removing duplicates from
…
-
KP.1.1.1> C7728T(Orf1a:S2488F)> T18771C> C20178T> del22331-22342(S:del257-260)
Query: T18771C, del22331_22342
Earliest sequence: 05-03 Ontario, Canada EPI_ISL_19134259
Latest sequence: 07-01 Denm…
-
The Super Search does not seem to display the results for each node (Glycan, Protein, Site, etc;) when searching by organism name for some organisms, but will populate results when searching by TaxID.…
-
Hi Michael,
Thanks for developing and maintaining Olivar. You might remember that we spoke a while ago about BED support for Olivar to help with assembler compatibility. I see you've since added this…
-
(Monkey testing find: Funny bug that's actually somewhat of a realisation of feature request #639 and thus useful)
When going back and forth under certain circumstances (unlikely to be encountered …
-
Good day everyone.
9 new sequences of a BA.2 strain were detected. Samples were collected between September and November 2023 from Gauteng, Mpumalanga and Limpopo, South Africa. NextClade assigns …
-
Olá Ronnie, tudo bem?
O pipeline de montagem está funcionando normalmente?
Porque eu implementei ele na Fiocruz e estava dando um erro, que ao "debugar" o script percebi que era na linha 175 do sc…
-
We have identified several strains circulating in Brittany (France) based on a BA.2 backbone but carrying a S:L452R substitution. These isolates carry also ORF1ab:S2519P. There are around 150 similar …