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[hicInterIntraTAD](https://hicexplorer.readthedocs.io/en/latest/content/tools/hicInterIntraTAD.html) seems to be very useful; however, I immediately ran into the division by zero error. Is it possible…
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Hi, having trouble with the conda install. Specifically:
```
>>conda create --name hicexplorer hicexplorer=3.6 python=3.8 -c bioconda -c conda-forge
Collecting package metadata (current_repodata.…
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### Description of feature
Why tool for loop calling would you like to see in the `nf-core-hic` pipeline ?
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Hello,
I was using HicPlotDistVSCount and got the following error :
```
Command executed:
hicPlotDistVsCounts --matrices HIC_ES_4.250000_balanced.cool --plotFile HIC_E…
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I tried to install hicexplorer inside a Singularity container with conda, and it didn't work due to incompatibility:
```
Collecting package metadata (current_repodata.json): done
Solving environm…
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While running scHiCExplorer with tutorial, I have some questions about scHiCExplorer tools such as Demultiplex and BuildMatrix.
(The tutorial means Analysis of single-cell Hi-C data index)
At firs…
khsjh updated
4 weeks ago
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hello,
I have a question on pearson correlation matrix (https://hicexplorer.readthedocs.io/en/latest/content/example_usage.html#a-b-compartment-analysis):
how to you calculate the correlat…
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I try to install hicexplorer on MacOS Monetary 12.3.1 and it generates the following error every time I issue the command. It appears that the problem stems from the OS version.. Can anyone help..
…
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Hi,
I would like to know if it makes sense to use rnaseq bigwig file in hicpca to flip the signs. For example, choose extra track type --> Histone Mark --> Histone Mark type=active. Would this be a…
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Dear authors,
I'm trying to scaffold a huge genome (~32Gbp). We produced about 2 billion valid Hi-C reads. LACHESIS runs through, and generates 14 clusters that totally make sense (judging by conti…