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The 5p and 3p pre-miR overhang relative to the canonical miRNA has to be extended up to $n$ if it is smaller than $n$.
$n$ will be left for the user to choose and will have a default value of 10 wh…
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Hi,
I'm testing the pipeline with inhouse PE data (after successful trim and merge), but it crashes with the following error:
XICRA miRNA --input test_XICRA --software miraligner sRNAbench
Wh…
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**Questions**
1) I have 61 samples, then could I get result from 61 samples? Specifically,
**is there a maximum sample number when running miRge3.0 ?**
The data size ranges from 700M to 1.2G …
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Hello, my data is Qiagen small RNA-seq. I tried to perform an analysis with the following code, but I encountered the following error.
export PATH=/home/yyan/miniconda3/envs/py3.7/bin:$PATH
outdir=/…
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Hi,
I have installed the latest ```bcbioRNASeq``` in another workstation to check if it can work. However, an error message popped up in the ```load data from the bcbio-nextgen final directory``` s…
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Hi!
I am trying miRge3 on a few human samples (just 2 for testing purposes from a total of 45 fastq.gz files).
When running it returned me the following errors:
```
miRge3.0 -s ./fastq_cat/165…
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Hello,
I was curious to know how you (the authors) settled on a value of 0.1 as a default for crThreshold. Is this based on previous literature or was it based on simulations you performed?
Just t…
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I ran into an issue when trying to read ".mirna" files using IsomirDataSeqFromFiles.
- I have 10 .mirna files [isomir.zip](https://github.com/lpantano/isomiRs/files/8047099/isomir.zip) from two group…
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I run miRge3.0 on 4 small datasets. I found the miR.Counts.csv results does not equel to mapped.csv results, as showed below
![miRge](https://user-images.githubusercontent.com/975135/139815460-a2b165…
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Hello,
I analysed the small RNA data using XICRA and it worked. So, I have now output file that's a little bit confusing for me. Here is how it looks like:
ID sample1 sample2 sample3 ....
hsa-…