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per https://github.com/sourmash-bio/sourmash/issues/1731, the [command line docs for sourmash sketch](https://sourmash.readthedocs.io/en/docs_4.0/sourmash-sketch.html) do not mention `seed`, which (ba…
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### Name of the tool
xengsort
### Tool homepage
https://gitlab.com/genomeinformatics/xengsort
### Tool description
a fast xenograft read sorter based on space-efficient k-mer hashing
### Tool ou…
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Hi,
I have successfully used Canu for all my de novo assemblies and I am embarking on creating a snakemake-env for running Canu+medaka+diamond for viral metagenomic sequencing. Has anyone successf…
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Testing on PPC64le, unit tests fail erroneously. The tests should be altered so that they no longer erroneously fail.
The error can be recreated by compiling on an IBM POWER8 Red Hat system with --w…
jlost updated
9 months ago
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**System: MacOS 13.6.3**
**Canu version: canu 2.2**
**Input command:**
```
canu -d ecoli-gen3 -p ecoli-gen3 genomeSize=5m -pacbio E_coli_K12_PACBIO/ecoli_p6_25x.filtered.fastq
```
The fastq …
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Dear Canu team,
I am currently using canu to assembly a highly repetetive fungal genome (>2/3 repetitive elemnts, total genome size roughly 127 Mbp). Since our cluster (SLURM) does not support auto…
AlWa1 updated
9 months ago
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Dear Canu team,
I have ultra-long read sequencing data (PromethiON flow cell from Oxford Nanopore) of _Drosophila erecta_ (genome size 145MB). Basecalling was done using Guppy version 6.5.7.
Prio…
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Hi Seqan-Team,
I have tested the ability of IBF to store many small protein sequences. I use the alphabet `seqan3::aa27`, the inserted sequences are not very long (maximum `13556` amino acids), b…
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Hi , I am having an issue running this barcode, it does not have alot of reads, so it could be that no contigs will be assembled, but I just wanted to double check with you. I am doing metagenomic vir…