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hi @martin-g @Yikun .What l do now is to use [bioconda-utils](https://github.com/bioconda/bioconda-utils) to build[ bioconda community software](https://github.com/bioconda/bioconda-recipes/tree/maste…
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Hi,
I have an experiment wih a whitelist composed of 35 barcodes (60bp long, non standard technology in development) and when I try to run bustools correct I immediately obtain :
(/bioinfo/local…
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Since `HDF5` seems to cause several unresolved issues (#58, #79 , #82, ...?) and it doesn't seem essential for `kallisto`'s core functionality (using the `--plaintext` option) it might be worthwhile t…
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Hello,
I downloaded Kallisto via a conda environment on my VM that uses Ubuntu, it seemed like it was installed correctly; however, when I tried to run a script that uses kallisto index and quant, …
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Hello,
when using Pizzly 0.37.3 (SeqAn 2.2.0) and Kallisto 0.43.1 with Ensembl 81 and one gets this error message from Pizzly:
```
Error, could not find any transcript sequences check that the i…
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I have followed https://pachterlab.github.io/kallisto/source guide to build Kallisto on a 11.2.3 macOS Big Sur, doing the following steps:
```
# install Homebrew package manager
% /usr/bin/ruby …
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So using the latest version 0.46 (as well as version .45) of kallisto with how_are_we_stranded_here produces this error
`stranded_test_gerald_H3MYFBBXX_1/kallisto_strand_test/pseudoalignments.bam d…
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sleuth_prep seems to always error with "subscript out of bounds" during step "normalizing est_counts". I'm trying this on my own data since, as others have pointed out, the link to the sample data is …
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Hello,
I have a set of custom novel 3'UTRs that I would like to quantify in single-cell data.
Ideally I would just want to quantify the 100 or so 3'UTRs that I'm interested in for speed's sake…
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Hi there!
Thanks for developing this awesome tool! I am currently using kallisto-bustools to generate single-cell equivalence class counts.
I am wondering if there is a way of **linking an equiva…