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In https://github.com/microbiomedata/nmdc-schema/tree/1364-limit-linkml-and-runtime-to-161
with linkml and linkml-runtime 1.6.1 (which is still behind 1.6.2 for both!)
```shell
poetry run do_sh…
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Opening an issue here to better track the status of this effort.
Previous discussion in https://github.com/NCATS-Tangerine/translator-api-registry/pull/122, with the currently-relevant comments sta…
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> I see, that's OK. Then let me explain what happened in my case: there is a link for non existent page.
I open this page: https://co-cddo.github.io/ukgov-metadata-exchange-model/OrganisationValues/
…
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### Guidelines for Curating Biomedical Knowledge into Knowledge Graphs using the Biolink Model
Biolink Model usability: some few years ago, the idea of documenting "best practices" of applying Bio…
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We need to versioning support models generated via biolinkml. The language supports a version identifier but, at the moment, there is no way to reference anything but the latest version of a given mo…
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Hey @caufieldjh!
Awesome idea! This is probably exactly what we need (I hope :)).
We have a bunch of free text fields that we want to standardize by mapping them to ontologies (ENVO, NCBITAXON, an…
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Hi @caufieldjh
I am working on a diabetes project where I am using Ontogpt. I want to build and install a custom diabetes template, I am following a custom schema page in Documentary and was able …
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I tried
```
ontogpt extract -t path/to/templates/phenotype.yaml abstract.txt
```
but got:
```
FileNotFoundError: [Errno 2] No such file or directory: '/Users/matentzn/ws/ontogpt/src/ontogp…
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Hi,
I am trying to build a docker image having installation of ontogpt in order to give it platform independence of running because as such I see it can not run on our HPC nodes or other Linux distri…
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Hi @MrHedmad,
I really like the idea of myr and it looks promising. My experience with ro-crate has been similar in the past.
I had a few questions / suggestions regarding the specification.
Th…