-
I am interested in using SKiMpy to study the interaction of the bioenergetic network (proton pumps, ATPases and associated transporter processes that are powered by the membrane potential/ion motive f…
-
I'm running AnyPyTools as a package in an Anaconda environment. When I try to run the first commands of the AnyPyTools "getting started" jupyter notebook, I get an error that says "Could not locate An…
-
### Description of the issue:
1. reaction MAR07161, representing gene transcription (RNA formation) is not happening in the nucleus
2. there is no RNA in the nucleus and transport reaction of RNA fr…
-
### Description of the issue:
1. reaction MAR07160, which represents DNA formation is inside the cytoplasm in the model.
2. reaction MAR07163, which represents DNA degradation by the [activity of DN…
-
I am trying to do gapfilling of a plant genome scale metabolic model, which has the IDs and reactions with the kegg nomenclature. To fill the reactions in my model, I generated two models, one with al…
-
Via Matthias.
0u812 updated
3 years ago
-
---
id: cobrapy
version: 0.22.1
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COBRApy/eccb9db64e44b41e026708957f12983e4bb1a24a/biosimulators.json
specificationsP…
-
I'm using gapfill function after applying FASTCORE.
On some models gives the error:
```
'failed to validate gapfilled model,
'try lowering the integer_threshold'
```
I opened the gapfilling s…
-
**Describe the bug**
ProgressReportNumber in the Milestone Tracker is not showing milestones 3 and above for some studies.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to projectLive-…
-
Hi ,
After constructing metabolic models using this wonderful tool, I want to validate the accuracy of my models using BIOLOG plates, like the paper 'The functional repertoire contained within the …