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I've had difficulties trying to resolve this issue as the log file is vague. I was able to overcome it by removing Semibin from the workflow but I've tried executing on two different systems with diff…
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Hi Silas
I'm Yustinus. I tried using atlas_metagenome but I got an error like the following:
Error in rule predict_genes:
jobid: 681
input: Assembly/fasta/S028.fasta
output: S028/a…
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Hy,
I was trying for the first time the software however it is giving this error:
binette --extension fa --threads 10 --min_completeness 50 --outdir refined/ --contig2bin_tables genomes.stb --cont…
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**This is the main issue for adding metagenomics content to the workshop material**
The plan is that we have most of the material first in this repo and then we fork it for the GHPP SGS course end …
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**Describe the solution you'd like**
I'd like another action (`bin-contigs-maxbin2`) which can take contigs as input (plus whatever else that is required) and use MaxBin2 to produce bins, similarly t…
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Hello, I've been trying to run the `binning-eukaryotic.py` script on a small assembly to predict eukaryotic MAGs. However, the process fails every time, regardless of whether I try to do the binning w…
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> Due to the scale of the problem, taxonomic profiling remains an 'unresolved problem' in bioinformatics.
> !--# (Moritz): In my opinion, the more important part of the problem that remains unresolve…
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### Description of the bug
Could you please see below error that happened every time I re-run the pipeline. I was about to send the log file, but there are too many as I have repeated this run many t…
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@jmtsuji Is there any quick read-level way of detecting if there is a high likelihood of multiple genomes being present before assembly? If my employers commercialize this, there is a high probability…
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Hi,
Thanks for this tool. I used it for binning and ran Maxbin2, concoct, and metabat2 simultaneously. Concoct and metabat2 have finished successfully, but Maxbin2 is still running. It's quite weird …