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Hi,
I have noticed a lot of errors in the taxonomy ranks when looking at the names. At first, I used the already trained version (4.13) when I noticed the problem. I decided to use the pr2_version_…
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khmer_env)ljcohen@c8-22:~/dammit$ dammit annotate A_xenica.Trinity.fixed.fa --user-databases protein.fa --busco-group metazoa --n_threads 4
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dammit! a tool fo…
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We have
https://www.pombase.org/term/MOD:00818
I wanted to check this using
https://services.healthtech.dtu.dk/services/NetGPI-1.1/
but I haven't been able to run the search to completion.
Pr…
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Hello,
I am using eggnog to functionally annotate proteins of 276 species. After using EggNog, the protein headers do not have any information about the gene.
For example, this is what my prote…
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CL is a frankenstein ontology when it comes to taxon specificity:
1. historic sensus, to genera and above; e.g CL:0000662 ! neuroglioblast (sensu Nematoda)
2. sensus to 3 letter codes with *expr…
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We've talked about this before, just wanted to capture the request. This might be offered as a static page listing source trees/studies, but a **tree collection** for each release might be more useful…
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![image](https://user-images.githubusercontent.com/4998871/180483397-fb75911f-96a5-4ace-beca-f7b7e32fdeaf.png)
There is no taxon restriction but the term is linked to CL term for 'animal stem cell'…
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see dib-lab/eelpond/issues/17
`dammit databases --install --database-dir /home/titus/eelpond/databases --busco-group metazoa --n_threads 4`
```
Installing...
#### Run Tasks
- [ ] download:Pf…
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Examples include:
https://bio.tools/?page=1&q=assembly%20converter&sort=score&ord=desc
Need to fix the homepages to not have them point to the list of tools, but to the actual tool
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Hi @mugitty!
Creating this ticket for tracking how we want the PAINT curation tool and validator to respond when taxon constraints are violated (TC invalid). The requirements:
1. Display TC inva…