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Currently the BIDS anatomical locations (NAS,LPA,RPA) are created on the Freesurfer MRI according to the directions on the mne_bids website. This requires creating a freesurfer import and T1.mgz reco…
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Dear developers,
I am trying to run micapipe on my datasets. I manage to get through -proc_structural, -proc_surf, -post_structural, and -GD. However, I face an error for both of my datasets at -pr…
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Hi mindboggle experts,
I am now processing longitudinal data with mindboggle. I’ve tried to set the FreeSurfer longitudinal results as the input to mindboggle, however, it failed since no 001.mgz in …
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Tested using Evilnat 4.88 and MGZ test build 1.41 (with XMB layout)
A workaround I found for this issue is to change to a different UI style (like coverflow), and then change back to XMB-style, whi…
ghost updated
2 years ago
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Currently, we use Nipype's full recon-all interface to detect whether FreeSurfer has been fully run, and also to finish the run if it has not.
This has complications when using FreeSurfer subjects …
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As reported on forum [here](http://community.mrtrix.org/t/dwipreproc-eddy-cuda-slspec-unable-to-open-file-multibandgroups/1573/23).
Somehow a non-UTF8 byte is being exported by the `mrinfo -json_al…
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**Task** (what are you trying to do/register?)
I am trying to prepare my data to be used as according to the README.md, but I am stuck in knowing how/where to crop exactly
**What have you tried…
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Hi,
When running `pet-surface` on macOS (Mojave), I noticed that `pet-surface` or `pet-surface-longitudinal` pipeline is crashing when the pipeline is executed on very long path.
`gtmseg` from F…
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Hi,
I just installed easy_lausanne and tried registering the atlases to a DWI B0 volume, but I run into a python error after a call to mri_label2vol (full output: [easy_lausanne_output.txt](https://g…
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@kitchell
I am looking into the 3Dsurfaces datatype (https://brainlife.io/datatypes/59307a08436ee50ffd973278) and see if we can use this to output pRF surface. Although most 3Dsurfaces dataobjects…