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### Ask away!
Hi,
we used 5prime v3 chemistry for Nanopore sequencing, is it the same as 5prime v2? Could I use 5prime v2 as well or is there any update?
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Hi,
With a new nanopore dataset i have been running with an error in the cluster_sorting step. Attached is the log for reference.
[2024-10-31T111904.682386.snakemake.log](https://github.com/user…
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Hello! Thanks for providing this awesome tool!
I'm presently working on samples done on different technologies, i.e. Illumina based or Nanopore based. The samples processed with Illumina and standar…
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could i use it to analyse my nanopore data?thanks !
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### Problem Description
We are currently decontaminating the short reads using `bbduk.sh`. Would it make sense to decontaminate the long reads as well?
### Problem Solution
I've seen certain …
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Hello! Thanks for putting together CliqueSNV - the ability to leverage long reads should be really powerful across different fields I think. I was curious if it would be possible to use long reads tha…
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Thanks for developing Strainy!
I'm trying to use amplicon-based Nanopore reads to figure out strain abundances in bacterial samples. The pool has 740 strains and each sample may contain ~10 of them. …
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Command used:
`
vsnp3_step1.py \
-r1 "$r1" \
--spoligo \
--nanopore
`
Error message:
`
Traceback (most recent call last):
File "/home/bioinfo/miniconda3/envs/vsnp…
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I am interested in testing `funpfrofiler` for long reads (Nanopore; ~Q20+ chemistry). I have paired QCd Illumina data (which were also used for reconstructing high quality MAGs) as a comparator. In th…