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Hello! I am recieving the following Uncaught Errors when trying to initialize the Nextflow VSCode plugin:
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## Bug report
`nextflow inspect nf-core/rnaseq` fails with error:
```
The following invalid input values have been detected:
You used a core Nextflow option with two hyphens: '--cache'. Ple…
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## Bug report
### Expected behavior and actual behavior
Expected:
Running a workflow `-with-weblog` option in combination with the `output`-block finishes successfully.
Actual behavior:
Wo…
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### Operating System
Windows 11
### Other Linux
Ubuntu 22.04 via WSL2
### Workflow Version
v5.3.0
### Workflow Execution
Command line (Local)
### Other workflow execution
wf-template
### EPI…
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### Description of the bug
Hi,
I encountered an issue while running the pipeline with data generated using the nf-core/RNAseq pipeline. Specifically, when attempting to run the gprofiler analysis wi…
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Hi @GallVp ,
For my project, I need to filter the synteny alignment based on a strict identity (for example, `delta-filter -i 95`). How to config this in assemblyQC? One option I'm considering is t…
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**Describe the bug**
I have successfully run Helixer locally using the pre-constructed docker container. Note that I am running it _without GPU_. When I run it on AWS using Nextflow, this happens:
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Related to https://github.com/nf-core/sarek/issues/687, which is marked complete but `loftee` still do not run and generates the same warning.
### Description of the bug
I am trying to annotate a vc…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
wf-basecalling v1.4.2-g9c0f9db
### Workflow Execution
Command line (Local)
### Other workflow execution
_N…
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## New feature
Proposed change, if `resourceLabels` are present for a given process. They should populate the AwsBatchTaskHandler's tag's field when Nextflow registers a job definition on AWS Batch…