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### Context
[Overarching (internal) context](https://github.com/nextstrain/private/issues/109)
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### Context
Now that bioconda supports osx-arm64, we can finally try to make a native environment, which will speed up local builds by around a factor of 2.
There's quite a lot of work to do: all …
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This issue asks for a review of the current documentation surrounding nextstrain from those with background in this area. This review could touch on overall layout, linking between sections, and conte…
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# Dengue virus DENVx genotypes
An update regarding the classification of dengue virus (DENV) genotypes. As suggested by @rneher in a [Slack channel](https://bedfordlab.slack.com/archives/CM3QYTQ10/…
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_https://github.com/sars-cov-2-variants/lineage-proposals/issues/991 Part I
https://github.com/sars-cov-2-variants/lineage-proposals/issues/1675 Part II
https://github.com/sars-cov-2-variants/lineag…
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## 1
from https://github.com/nextstrain/nextstrain.org/pull/874#discussion_r1626765546
https://github.com/nextstrain/nextstrain.org/blob/aae874c06cd6d17616710c501ad73104a7c5e051/static-site/src/…
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To make software packaging easier, it helps if all of our tools are available via conda-forge or bioconda.
@joverlee mentioned that in particular `fauna` isn't available via conda yet.
Motivated…
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This terminology was left as-is in https://github.com/nextstrain/cli/pull/355 (`nextstrain-pathogen.yaml`) even as it got a little more nuanced: it's no longer "the directory which was passed to `next…
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### Troubleshooting docs
- [X] My problem is not solved in the Troubleshooting docs
### Anaconda default channels
- [X] I do NOT use the Anaconda default channels (pkgs/* etc.)
### How did…
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![image](https://github.com/user-attachments/assets/2a92ad3d-b33f-4d60-86d8-1417ff4fcf61)
![image](https://github.com/user-attachments/assets/9da107d9-0633-4c08-9888-e13693b1b6af)
tree: https://next…