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NGless 1.1.0 has been introduced and the developer docs new link
https://ngless.embl.de/whatsnew.html#version-1-1-0 must be updated into the Documentation so that developers can refer to the updated…
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The documentation can include details, as to how developers can test various scripts in /tests directory and then see the visualization of test logs and reports easily.
Also, links to Human Gut Metag…
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### General summary/comments (optional)
Operating System - OpenSuse 42.3 Leap
### Steps to reproduce
For example:
1. Install stack using `curl -sSL https://get.haskellstack.org/ | sh` as men…
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I got an error message when i tried to run it on some files that have a big of an unconventional name.
The files are named, for example:
```bash
SAMEA3136648.pair.1.ERR688506_1.fastq.gz
SAMEA313…
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If the user does
c = count(mapped, features=['DOES_NOT_EXIST'], functional_map='mymap.map')
and `DOES_NOT_EXIST` is missing, then the user will get an error **only when `count` is run**.
…
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Every count file that NGLess generates is sorted by rowname, and `collect` relies on this. However, `countsfile` can be used to load a non-sorted file, which will lead to a very bad result.
`counts…
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There are a few Haskell packages on bioconda (`grep`ing just now, I find my own ngless, as well as cmv, rnalien, and selectsequences).
None of them build on macOS.
They all have the relevant `sk…
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The documentation for load_mocat_sample in [stdlib.md](https://github.com/ngless-toolkit/ngless/blob/master/docs/sources/stdlib.md) doesn't explain how single files should be named. Reading the [sourc…
mkuhn updated
5 years ago
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NGLess `load_mocat_sample` does not ignore empty lines at the end of a fastq.gz file. Not sure if this is a bug or just something it was not meant to do
This is happening on both versions 1.0.1 and…
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Issue:
```bash
Python 3.7.8 | packaged by conda-forge | (default, Jul 23 2020, 03:53:36)
[GCC 7.5.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import…