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Hi, there are four categories of labels in my dataset.json, and now the prediction is 4 labels per patient in one nii.gz file, if I want to output a specific nii.gz file for each patient's label in th…
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Hello, can I use nnunet to do classification based on segmentation result? Then what should I do with the data, cause the default label should be image, I want to have label with both image and number…
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When trying to train a model with plan `nnUNetResEncUNetMPlans` and trainer `nnUNetTrainer_DASegOrd0_NoMirroring` I get the following error:
```
Traceback (most recent call last):
File "/mnt/nor/…
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Dear Experts,
Congratulations and sincere thanks for releasing this extension.
I request inputs to run nnUNet models, available at https://zenodo.org/records/3734294, other than the TotalSegmen…
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WARNING! Cannot run postprocessing because the postprocessing file is missing. Make sure to run consolidate_folds in the output folder of the model first!
The folder you need to run this in is /data/…
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I keep getting this error saying a post processing file is missing for the cardiac segmentation sample.
WARNING! Cannot run postprocessing because the postprocessing file is missing. Make sure to …
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WARNING: In /tmp/SimpleITK-build/ITK/Modules/IO/NIFTI/src/itkNiftiImageIO.cxx, line 1934
NiftiImageIO (0x46dded0): /mnt/d/Desktop/paper/LMa-UNet-main/data/nnUNet_raw/Dataset027_ACDC/imagesTr/patient0…
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Dear nnUNet - team,
I have trained a model on a cluster, but due to time constraints this training was aborted. I wanted to continue it by adding the --c flag to my SLURM-script:
`CUDA_VISIBLE_D…
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Hello,
My team and I have encountered an unusual issue regarding the convergence dynamics of nnUNet. Initially, we trained nnUNet for 2000 epochs and observed the following learning curve:
![pro…
ndebs updated
2 months ago
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In this issue, I detail the process used to training several region-based nnUNet :
- a 3d_fullres region-based nnUNet trained on PSIR and STIR images
- a 2d region-based nnUNet trained on PSIR and …