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**Is your feature request related to a problem? Please describe.**
I have large WSI data and multi-class jpeg masks, but I am so tired to find a solution to make them work with any hovernet implement…
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Some of the networks we have in plantseg output foreground probability maps together with boundary predictions. This can be used in the segmentation post-processing step in order to filter background …
wolny updated
7 months ago
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Hi, I am curious about the AJI calculation of prediction images and the ground truth.
From the code, looks like you are using binary predictions with binary masks to calculate the AJI.
Would this …
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Hi, thank you for the good project.
However, two pre-trained models on pannuke and monusac datasets are not available anymore. Can you check again?
https://github.com/BiomedSciAI/histocartography/…
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Hi,
Is there a way to put stardist in a macro to apply the segmentation for each slice and recombine them to reconstruct 3D nuclei ?
It would be great, I try but don't find the command to skip the i…
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old workflows that were added before the “workflow type” field was added for each workflow step (before March 2019) need to be curated to update the workflow type. e.g. all the workflow steps in http…
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Reported by Raffa: after re-running a (modified) pipeline, the metadata download apparently succeeds but the CSV file is empty (consists of just the header). In the server logs we could find::
```…
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Not sure if this was already discussed.
SplitOrMergeObjects in 3D analysis is demanded, as Median Filter and RemoveHoles sometimes result in over/under-segmented objects.
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I am working on cell counting model and using DSA+Histomics for it, Can i also include a text number in the middle of the region of interest for which the nuclei segmentation boundaries are generated?…
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I noticed that IdentifySecondaryObjects should support volumes was marked as done. I am getting the following error message when I try to use the IdentifySecondaryObjects module which is downstream f…