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Thank you very much for your software output, which provides a new workflow for viral group research!
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Building a new DB, current time: 03/09/2024 10:19:13
New DB name: /home/zhongpei/hard_dis…
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Dear seqinr team
I have a request.
I am designing PCRs for different phylogenetic levels based on a few hundred sequences. For that purpose it had been handy to have a consensus sequence with IU…
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Hi, I tried to use bindash to process my fasta data. I first used the following command:
./bindash sketch mydata.fas --outfname=genomeA.sketch
The mydata.fas file size is about 50M, containing more …
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Hi, hope someone can help me.
I have a problem with the construction of an AAI Matrix. When i run compareM, Ubuntu returns me this message "No genomes found in directory: input_AAI. Check the --file…
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Hello Author, I want to ask a question. I noticed that the input sequences for diamond need to be amino acid sequences. However, my whole genome sequences are nucleotide sequences.
I would like to…
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There is a small bug in the typing tool for the resulting xml file.
I've used the CLI tool to produce the bug.
If Blast is unable to determine the identity of the sequence, the tool outputs:
```
…
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I have used Concatenator to obtain numbers of nucleotides in a fasta file, and found a bug in the calculation. It seems that for some of the counts, the algorithm has a bug and provides a number that …
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We need some object and/or data properties for listing reference and alternate nucleotide (and/or amino acid) sequences. I could not find any other ontologies that have these.
so to say something li…
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**Description**
**Sub-lineage of:** KP.3.1.1
**Earliest sequence:** 2024-6-2, Spain – EPI_ISL_19225587
**Most recent sequence:** 2024-8-2, USA, New York – EPI_ISL_19341409
**Continents circulating…
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#### Summary:
The complete nucleotide sequence retrieved from NCBI is written to the output, including any terminal stop codons.
These sequences often cannot be used for backthreading onto aligned p…