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### Purpose/implementation Section
#### Briefly descibe the feature and provide meaningful references
The Bushman Lab has a new gene list since the 2017 list was used- may be worth updating
…
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This feature involves switching our tiering for the filtered events table (currently based on the CGC dataset) to the more informative OncoKB API.
**Responsibilities:**
- **Column Set Definition…
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Provided cores: 1
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 features
1 finishSim
1 predict_test
1 …
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Initial notes on proposed scope and definition of these VA type, based on requirements and considerations documented [here](https://docs.google.com/document/d/1J4AqGDEqyK8KAzfiowgHYKJNvzHuwHSHgkN9dleL…
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After lengthy discussion it was decided that to support documenting of oncogenic evidence (distinct from biochemical functional evidence) we should do the following:
1.) For functional evidence. A…
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Update the annofuse gene list using https://www.oncokb.org/cancer-genes for oncogene/tsg which are not found in the tsg list here and/or check overlap. The initial lab list of genes (allOnco_Feb2017.t…
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#### What analysis module should be updated and why?
Update annotation to use https://www.oncokb.org/cancer-genes to delineate oncogene/tsgs. Also, add an output table for the DE annotated genes …
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Aim: Import high confidence GO annotations (GO term to gene) for GO terms directly linked to CL terms - bidirectional by and object property restriction.
The links from GO terms to Genes (proteins)…
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#### What data file(s) does this issue pertain to?
`fusion-annoFuse.tsv.gz`
#### What release are you using?
v13-v15
#### Put your question or report your issue here.
Per the comment …
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2024登録改訂文書branchに配置いただいたPDFを元に、スキーマの修正箇所をまとめました。
内容が多くお手数おかけしますが、認識が合っているか確認をお願いいたします。
※いくつか不明点があったため、最後にまとめて記載しています。合わせてご確認をお願いいたします。
# 子宮頸がん
## CC/staging.json
詳細
### (1) cTNMのタイトル変更
> …