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Hi, I want to a create pangenome plot for bacteriophages with **phylogenetic tree** (left side) + **gene presence/absence** (right side) + **gggenome plot that has all ORFs/CDS** (in top of presence/a…
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### Description
- OL is still using the old macro placer (macro_placement) rather than the new one (rtl_macro_placer). The old one should be considered deprecated and will eventually be removed fro…
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Hi all,
Sorry if this question is silly.
I have several fasta files from some kegg orthogoly of my interest which I extracted from prodigal and hmmsearch result. For example, the nifH, that is the…
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Hi,
I am interested in some particular gene in my genome sequences, and unfortunately, Prodigal doesn't predict it. It predicts a shorter version that does not code for the right protein. When I look…
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I am using the DiscreteTreatmentOrthoForest's const_marginal_effect() method to estimate my test data, which is 4840 by 24. I used a trained model and call model.const_marginal_effect(test_data) direc…
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Hi, I use txCdsPredict to extract ORF feature, but I got the following error:
data/txCdsPredict: error while loading shared libraries: libmysqlclient.so.16: cannot open shared object file: No such f…
zgs17 updated
4 years ago
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```
What steps will reproduce the problem?
1. Try to parse an ORF RAW image
2. Iterate through the directories (you will get an IFD0 directory)
3. Try to iterate through the tags (you will find no tag…
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```
What steps will reproduce the problem?
1. Try to parse an ORF RAW image
2. Iterate through the directories (you will get an IFD0 directory)
3. Try to iterate through the tags (you will find no tag…
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script needs to be modified - speak to Nayam
1. should run as a script with a path (argument) without the need to copy it into the folder
2. create a temp folder and remove it after execution
3. …
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```
What steps will reproduce the problem?
1. Try to parse an ORF RAW image
2. Iterate through the directories (you will get an IFD0 directory)
3. Try to iterate through the tags (you will find no tag…