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Hi Shaojun, I just ran this, and got an error...
SemiBin single_easy_bin -i *fa.gz -b *.bam -o output
SemiBin single_easy_bin -i *fa.gz -b *.bam -o output …
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**Submitting author:** @althonos (Martin Larralde)
**Repository:** https://github.com/althonos/pyrodigal/
**Branch with paper.md** (empty if default branch): paper
**Version:** v1.0.0
**Editor:** @mik…
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Hi Richard,
Thank you for creating TAMA tools for ISO-Seq analyses!
I'm interested in the gene models reported in the output file prefix_gene_report.txt (after running the tama_merge tool). Im w…
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https://mp.weixin.qq.com/s?__biz=MzA3ODU1NjUyNw==&mid=2652325414&idx=1&sn=ecf8f30460bf60941bbc4ff9c8255a88&scene=21&srcid=0914oXcqUKJw4IgemTntWp2O#wechat_redirect
ixxmu updated
2 years ago
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Hi,
I'm playing with Cenote-Taker2 for the first time, and (as far as I can tell) it keeps hanging: i.e. simply stopping execution with no feedback or continued output or execution. There are a co…
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I'm getting a KeyError during the classification step:
```
**** Performing Classification of Isoforms....
Traceback (most recent call last):
File "/home/BIOTECH/zamanian/install/SQANTI3/sqanti…
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- [x] Tidy up variable names for genes and pbp
- [x] Switch to gff only input for pbp genes
- [x] Streamline main function in pen_checker_cdc.py
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## Site Health Report
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## Description
In Pods 2.8, if I click in a relationship field, I'm shown a menu of options; but if I try and search by entering part of a title, it just says "No options."
## Testing instructi…
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We need to write an explicit gff3 specification for our transcriptome gff3, with code to test this added to `check_gff_fasta.py`. Making transcriptome annotations compatible is the key to bringing in …