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*Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/322
Defining mutations: FY.3.1>G4109T (ORF1a:D1282Y)>The possible branch (Usher could not show the deletion branch?…
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We know that a number of our recombination nodes are erroneous, and a number are probably correct. In particular, the ones that are designated by an `Xyy` Pango designation are likely correct.
We s…
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When comparing only Pango lineages, we could show a small tree to visualize their relationships.
For example, if the user is comparing B.1.1.7, BA.1, and BA.2.75 ([see here](https://cov-spectrum.or…
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This week (2022-04-17), I noticed the [public trees](http://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/UShER_SARS-CoV-2/) have a new(?) nomenclature for recombinant lineages that takes the format `mis…
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Hi TOAST team,
I am interested in curating the representative genomes for VOCs/VBMs. And according to your recent publication (Xiaoli, Lingzi, et al. "Benchmark datasets for SARS-CoV-2 surveillance…
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Would it be a good idea to add BA.2.9
As of (today) has 349851 total sequences so far and in many countries.
I believe European Centre for Disease Prevention and Control labels it as a **Varian…
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from: https://github.com/sars-cov-2-variants/lineage-proposals/issues/1603
![image](https://github.com/user-attachments/assets/841ee3cc-f216-487f-bcd9-ad1ccb1c7ce4)
tree: https://nextstrain.org/fetc…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/656
### **Description**
**Sub-lineage of:** XBB.2.3.3
**Earliest sequence:** 2023-7-30, Netherlands, Noord-Brabant —…
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There is a recent defluqe branch expanding
KP.3.2 >> C18981T > C21590T > S:S31del (del21653-55), C14790T then C23086T (not present in all samples)
Query: C18981T, T3565C,C14790T
Samples: 34
Places…
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Proposition of curation of lineage_notes.txt file (formating issues etc... )
[lineage_notes.txt](https://github.com/cov-lineages/pango-designation/files/12599467/lineage_notes.txt)