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Dear Demichev,
This is a derivative question of another issue（ #1162 ） I had earlier。Before we got the diann parameters from other labs, we searched the database ourselves and compared them using ver…
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Dear Vadim
In the diann results, most of the Protein.ids are uniprot accession ids (from the fasta file I used), but some are accession ids combined by ";" . Some are combined with cRAP-***, I thin…
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RalfG updated
2 months ago
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There are some minor inaccuracies in some of the examples in the specification draft 12:
- page 8: `EM[R: Methionine sulfone]EVEES[O-phospho-L-serine]PEK` -> This term doesn't appear in RESID. Note…
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Compare CPU_DV and GPU_DV on HPC with peptides and peptidoforms -> plot
Add system info
Update doxygen docs once completed!
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> Hi Ralf,
>
> I tried the new features today and they seem to work. However, when I set more than one cpu in the config file, the process seems to get stuck in the multiprocessing step at the very…
RalfG updated
3 months ago
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- For fraggraph we need to get the positions of the modifications from the peptidoform string
- E.g. `get_modification_positions("ARTKQTARKSTGGKAPRKQLATKAARKSAPAT[-79.966331]GGV[+79.966331]KKPHRYRPGT…
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Hi,
I am trying to use ms2Rescore to rescore the output i get from a searchGUi / peptideshaker analysis
here is the log of ms2rescore in debug mode
```
Running DeepLC for PSMs from run (1/1): `5…
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Hello
I am trying to run ms2rescore but get the following error :
```
Reading PSMs from file...
Reading PSMs from PSM file (1/1): `C:/Users/ofm83/OneDrive/Documents/Megaphobema_perterklaasi/o…