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toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0
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My project will analyze _Salmonella enterica_ subsp. _enterica_ serovar _Enteritidis_ (_S. enteritidis_) genomes from a variety of international locations. I think the paper given below would be a goo…
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The notes below are from a conversation with BASE who are trying to harvest from [our endpoint](https://enkore.toolforge.org/oai_pmh/?verb=ListRecords&metadataPrefix=oai_dc) to update [their represent…
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These are from SILVA, but seem to have no subtaxa, and may simply be RNA sequence clusters. Not sure if anything need to be done about this or not, to if it is symptomatic of a general SILVA issue
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Hi,
I used iqtree to construct phylogentic trees, but there was no BS values in these trees in two nodes.
Commandline: iqtree -s zj_0.9.fasta -nt 6 -m JTT+F+R5 -bb 10000 -safe -bnni
![image](https…
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It should be possible to use RAxML slightly different. Summarizing [this](https://groups.google.com/g/raxml/c/OPXnrlogl-Q/m/XoQuh_jBAQAJ) thread, the idea would be to:
1. Do phylogenetic placement of…
rvosa updated
7 months ago
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Hi,
I'm lucky enough to get to know Gappa. It's a versatile tool for analyzing and visualizing phylogenetic data. I want to convert a taxonomy of tab files into tree files and visualize these trees …
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### Author(s) of proposal
Ran Wei
### Name of taxon
Ellipinema and Lepisorus
### Rank of taxon
Genus
### Approximate number of species affected
_No response_
### Description of change
Rejecti…
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Dear @ivan-aksamentov,
Could I know if there is any example for handling HIV data to run alignment, mutation calling, clade assignment, quality checks and phylogenetic placement?
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Hello,
I'm trying to create a NIX package of your tool (which is used in my computing center) but I'm facing an issue during compilation, and I can't understand why. I don't know if you have some N…