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[Steps in data analysis](http://barc.wi.mit.edu/education/hot_topics/ChIPseq_2016/AnalysisofChIP-seqData2016.pdf)
0. **Preprocessing**:
i) Bad quality -> Tool: Use “FASTQ Quality Filter” and/or …
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the `run_pycistarget` wrapper function contains a few occurrences of a line like this one:
https://github.com/aertslab/scenicplus/blob/61c17c842d25e537915f4caf7c604179e979603f/src/scenicplus/wrapp…
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How genetic variations and epigenetic dynamics contribute to normal biological function and disease processes[^1].
Teamwork is a significant part of science. When the right group people who have uniq…
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- [x] COSCUP - Conference for Open Source Coders, Users and Promoters 開源人年會
- [ ] OSDC - Open Source Developers' Conference
- [x] SITCON - Students' Information Technology Conference 學生計算機年會
- [ ] …
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Create the list of interview questions with cyclists, racer promoters, coaches and other people from cycling industry.
All this interview we will post on our blog. And the main idea is getting informa…
Me4ta updated
8 years ago
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**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
```python
if 'region_to_gene' not in scplus_obj.uns.keys():
log.info('Inferring region to gene re…
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Hi @katrinskaya and @mphillipsea . The discovery is well under way and we have a couple of questions around the content of the dashboards for your team.
1. From what date should we build the charts? T…
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### Discussed in https://github.com/aertslab/scenicplus/discussions/273
Originally posted by **rogercasalsfr** December 18, 2023
Hi everyone,
I am struggling to get the last step running sc…
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Hello Again,
I have a question regarding annotateInteractions().
When I use this tool to annotate anchors (ie promoters, enhancers), I end up getting a lot of anchors classified as "distal" if …
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Hi There,
I am attempting to call cooltools.api.snipping.pileup(clr,features_df=peak_df , flank=300_000), where :
peak_df = pd.read_csv(f"ctcf.enhancer.promoters/{peak}.bed", sep="\t", names=['c…