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We will maintain a file of terms where it should always be possible to specify "assayed_using" extensions.
To start with lets keep it simple with a single term
"cellular protein localization" (and c…
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Hello,
We have recently published a protein function annotation tool (i.e., [Mantis](https://github.com/PedroMTQ/mantis)) and are now interested in building metabolic networks using the annotations…
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Hello,
I have been trying to run BRAKER for a while and I am running into some problems relating to protein-based annotation. I successfully ran BRAKER with rna-seq only, but when I run protein onl…
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In annotations (gff3) files, what should we do about genes missing the Note attribute? The InterMine build process expects this attribute to exist.
Workaround for experimental ViciaMine: I added ";…
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I think we should add this. It seems a bit odd not to....
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The histidine kinases of E. coli two-component systems are inner membrane proteins. They often contain a large periplasmic domain for sensing an external signal and they always contain cytoplasmic dom…
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Hi,
My results files are empty (contain headers only). Could you take a look please? Any help will be greatly appreciated.
I installed reCOGnizer as explained in the README and am using a bacter…
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These each should have fewer than 10 manual annotations.
GO:0033671 negative regulation of NAD+ kinase activity
GO:1905688 negative regulation of diacylglycerol kinase activity
GO:1903300 negati…
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Dear Plinder Authors,
I have a quick question regarding the system files. I was reviewing the system `8q5i__1__1.GA__1.ZB`, but I noticed that the DNA complex seems to be missing from both the `sys…
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All of the leaf terms shown below are labeled with 'do not annotate' (though 3 of them do have a 1-4 annotations).
Should they be obsoleted, or is the 'do not annotate' label an error?
```
|__O-g…
sjm41 updated
4 hours ago