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Using the same base objects from the other protocols (`NonEquilibriumCyclingProtocol` and `RelativeHybridTopologyProtocol`) we want to implement a protocol that supports protein mutation based on the …
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I disagree with the placement under cellular component assembly:
```
id: GO:0016226
name: iron-sulfur cluster assembly
namespace: biological_process
def: "The incorporation of iron and exogenou…
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Basically my question is: Can perses handle mutation predictions in complexes that involve a cofactor/ligand bound in one chain?
I have a system involving the study of Protein:Protein complex, usin…
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Dear Rosetta team,
I amt rying to predict Protein structures with short poly-U RNAs to identify putative RNA binding sites in proteins. However, the program fails because no database hits are fou…
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# Reduce need for rewriting IRIs
- [ ] shares IRIs for genes
- [ ] shares IRIs for proteins
- [ ] shares IRIs for metabolites
- [ ] shares IRIs for complexes
- [ ] shares IRIs for publicat…
egonw updated
4 years ago
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Hello.
While testing RFAA on a large protein-ligand complex structure, I received the following (I believe BLAST-related) error.
```bash
15:08:33.492 ERROR: In /opt/conda/conda-bld/hhsuite_170962…
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Hi,
thank you very much for making this available! I am using this together with RFDiffusion to create small protein complexes and the interfaces look very good in many cases. However, I found that …
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Hi,
Thanks for providing your code for scoring RNA-protein complexes. However, I am not able to use this method for my work as I am unable to unzip any of the files in this repo. Can you please prov…
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For some applications, such as protein-RNA complexes, I'd like to pair sequences by a custom method- and input already paired seqs (2 alignments where sequence X in ali 1 is paired with sequence X in …
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Hi There
I run into this problem. It seems that pro_ema_inference_epoch138_model.pt is not in the workdir file.
Could you please provide it?
Thanks!
python run_single_protein_inference.py…