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I'm a little confused about how to use the output from the prework and perform docking and Ligplus with Imatinib for alphafold. I downloaded the zip file from alpha fold and there's 5 different pdbs i…
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## Is your feature request related to a problem?
low protein folding rendering fps rate/low snapshot cycling rate, causing an unpleasant user experience
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## Describe the Feature
as can b…
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request from @bebatut
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should GO:0050821 protein stabilization be a parent of GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process ?
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Example: https://www.ebi.ac.uk/interpro/entry/InterPro/IPR017730/ Chaperonin ClpB
InterPro:IPR017730 Chaperonin ClpB > GO:response to heat ; GO:0009408
InterPro:IPR017730 Chaperonin ClpB > GO:prot…
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Hi Protein Folding team. After I ran the cloud formation stack per link provided in the readme, I opened a SageMaker JupyterLab session and than ran the instructions to do manual load per instruction…
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Install the package and requirements based on the instructions
https://github.com/PaddlePaddle/PaddleHelix/tree/dev/apps/protein_folding/helixfold-single
(BTW, is the required module cudnn: 8.10.1 v…
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Dear all
This is not an issue, its more of a question about the results i get when I run the eggnog emapper.
At the output table, when i look at the KEGGs, sometimes there are more than one KEGG I…
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What are some open datasets for evaluation? These will be needed to answer #3 about hyperparameters and algorithms
cc @andrenguyen
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consider combining structural biology with antibody design: https://www.bu.edu/computationalimmunology/files/2018/06/AntibodyStructure2018SummerSchool.pdf
seems to be a subset of the problem.