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Running this code:
```
import numpy as np
from semiconductor.recombination import intrinsic as intr
Aug_C = intr.Auger(material='Si')
print Aug_C.available_models()
```
I get the error message:
…
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Hi
When I run the ComparativeAnalysis --infer_recombination step using the command below I get an error that rooted tree I need for input does not exist:
baga_cli.py ComparativeAnalysis --infer_re…
ptric updated
6 years ago
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With fiasco.__version__ = 0.2.3, numpy.__version__ = 1.24.3, astropy.__version__=6.0.1, python 3.11 i get the following output for creating an oxygen element for 1e5K which seems reasonable:
```
f…
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Hi,
I've built a tree using a set of software tools and I would like to root the tree using iqtree2/UNREST. I tried running `iqtree2 -m 12.12 -s alignment.fasta -te tree.tre` but I get the followin…
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reported by: @CloudyLex
update to rates in this paper
Bryans, P., Landi, E., & Savin, D. W. 2009, ApJ, 691, 1540
Migrated from https://www.nublado.org/ticket/152
```json
{
"status": "new",
…
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- [ ] Add tests to check the accuracy of estimation of the recombination rate (func_test) and tests to check if the estimation of the recombination rate improves the accuracy of the peeling (accu_test…
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## Summary
Turn on the ability to use ambipolar species third body in dissociation or recombination reaction.
## Type of Issue
Suggestion for an Enhancement
## Detailed Description (Enhanc…
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For example:
```python
import stdpopsim
import numpy as np
# simulate first 20Mb of chr22
for mapname in ["HapMapII_GRCh37", "HapMapII_GRCh38"]:
sp = stdpopsim.get_species("HomSap")
…
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Dear recABC team,
This is a great name, recABCD is the main recombination system, recBCD complex (3 proteins). How can I ran it? Another question is when compare with ClonalFrameML, SAR11 (the isme…
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We are interested in simulating the effect of differing recombination on some population genetics methods. It would be useful to extend the demographic model to include a 'change recombination rate' …