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Dorado v0.8.0 now has four RNA modification models that can be used during basecalling but it is not clear whether the inosine_m6A model considers m6A in all contexts? In other words, should this be c…
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Hi,
could you please explain how can I carry run DTW time delay analysis across modalities? as mentioned in the paper, I ran RunChromVAR but what's the input file used in example code? https://git…
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Hello, I know this is probably not a bug with the code but I was hoping someone here would know.
I intend to run this on a M1 Mac and I cannot get past the conda env create -f UFold.yml
A few thin…
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**Describe the bug**
Hello. I seem to be getting an error at the get_search_space step in the scenicplus pipeline with snakemake. Any immediate thoughts about why this could be? Should my region se…
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Some questions
* Will FACS sorting disturb RNA?
* How should we preserve the cells post-sorting and pre-RNA isolation?
* How should we isolate RNA?
* What markers should we sort on?
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Hello MerenLab,
While at EBAME I was encouraged to open this discussion by @FlorianTrigodet and @ivagljiva, and bring it to @semiller10's attention.
DNA methylation is on the verge of constituti…
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Nice list from Mike Love
Rendered: https://biodatascience.github.io/compbio/
Source: https://raw.githubusercontent.com/biodatascience/compbio/gh-pages/index.Rmd
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* **What is the role o…
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …
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Hello again,
I have been using your tools for some time and now I would like to know more about how you designed your model model.dp2.CNN.arabnrice2-1_120m_R9.4plus_tem. bn13_sn16.both_bilstm.epoch6…
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@rawnakhoque I asked the PDF in our lab and he showed me that everything has been done in bash. Follow the installation and basic configuration step by step [here](http://homer.ucsd.edu/homer/introduc…