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Use branch `create_rna_seq_analysis_workflow_v1` to complete your work, it already has a nice start.
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Use branch `create_rna_seq_analysis_workflow_v1` to complete your work, it already has a nice start.
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# Data overlap
## Generate a `data overlap matrix`. Overlapping to the `ATAC-Seq differential accessible regions`
- [x] **ChIP-Seq:** `TRUE` or `FALSE` of there is an overlap between ATAC-Seq an…
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so pleased to use this,but i wonder whether this vae could be used on cpu not gpu?hope for your request
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#### What analysis module should be updated and why?
Running the `sex-prediction-from-RNA-seq` module with the v13 kallisto data lead to the loss of feature names due to #474.
#### What cha…
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Let's try to use regtools for this.
- regtools junctions-extract function: https://regtools.readthedocs.io/en/latest/commands/junctions-extract/
- parameters to specify:
- `-m 20` (should matc…
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I was trying copyVAE on two different datasets to get an idea for its performance and noticed a few small things that I wanted to point out, as potential improvement suggestions or in case someone els…
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Hello members,
I am currently working with TPM expression data obtained from RNA-seq analysis, and my dataset includes a diverse range of biotypes such as miRNA, lncRNA, pseudogenes, etc., resultin…
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Hi rMATS team,
I wanted to discuss a discrepancy I've encountered between the results obtained from rMATS-turbo analysis and what I observed in the Integrated Genome Viewer (IGV) while examining RNA-…
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Hi, I'm running example case using both RNA-seq and DNA-seq.
```shell
python /path/to/REDItoolDnaRna.py \
-i /path/to/rna.bam \
-j /path/to/dna.bam \
-o /path/to/my_output \
-f /path/to/refe…