NAL-i5K NAL_RNA_seq_annotation_pipeline issues

NAL-i5K / NAL_RNA_seq_annotation_pipeline

Other

5 stars 3 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

dockerhub notes

#62 mpoelchau opened 8 months ago
0
first attempt at correcting code for single library layout

#61 mpoelchau closed 8 months ago
0
Update docker settings for vcf pipeline

#60 spcspin opened 1 year ago
2
Single end data fail to normalize

#59 amcooksey opened 1 year ago
0
schistocerca_compatible

#58 dasterix closed 1 year ago
1
testing my own branch

#57 dasterix closed 2 years ago
1
Fix problem with adding score to bed tracks via add_trackList.py

#56 mpoelchau closed 2 years ago
0
Add unsafepopup:true to tracklist.json

#55 mpoelchau closed 2 years ago
0
A documentation on the process of creating a new container

#54 ZhiXuanLai closed 2 years ago
0
Download sra by accession

#53 ZhiXuanLai closed 2 years ago
0
update_readme

#52 debbiedai closed 2 years ago
0
Update documentation and module list to include edirect

#51 mpoelchau closed 2 years ago
0
Add bam to cram conversion

#50 mpoelchau opened 2 years ago
0
Remove 454 single from download_sra_metadata efilter

#49 ShangYuChiang closed 3 years ago
0
Exclude 454 single-end data from download_sra_metadata.py results

#48 mpoelchau closed 2 years ago
1
Modified download_sra_metadata.py

#47 ShangYuChiang closed 3 years ago
1
Handling (or not handling) PacBio SMRT data

#46 mpoelchau closed 2 years ago
2
Add "min_score": "0" to bigwig style

#45 mpoelchau opened 3 years ago
1
investigate -R and -n arguments

#44 mpoelchau opened 3 years ago
0
-o option doesn't work for RNAseq_annotate.py

#43 mpoelchau closed 3 years ago
1
add tracklist should move instead of copy files on server

#42 mpoelchau opened 3 years ago
0
add hyperlink to metadata on jbrwose page

#41 HsiuKangHuang closed 3 years ago
1
Modify the processing steps of RNA_seq_pipeline

#40 HsiuKangHuang closed 4 years ago
0
new test files for travis

#39 mpoelchau closed 3 years ago
3
Remove intermediate files after processing

#38 mpoelchau closed 3 years ago
2
Add new programs to setup.py if possible

#37 mpoelchau closed 3 years ago
3
try to move on from six.moves

#36 mpoelchau opened 4 years ago
3
Script to push files to apollo production server

#35 mpoelchau opened 4 years ago
2
Add junction reads track

#34 mpoelchau opened 4 years ago
9
normalize fastq files prior to merging and mapping

#33 mpoelchau closed 4 years ago
2
Update trimmomatic and HiSat2 parameters

#32 mpoelchau closed 4 years ago
4
Figure out how to reduce processing time

#31 mpoelchau closed 4 years ago
2
Limit the amount of SRA data to download per run/organism

#30 mpoelchau closed 4 years ago
1
sort and index downsampled bam

#29 mpoelchau closed 4 years ago
2
Set up pipeline on Ceres

#28 mpoelchau closed 4 years ago
2
Update downsample bam

#27 mpoelchau closed 4 years ago
2
steps adjustment of RNA_seq_annotation

#26 HsiuKangHuang closed 4 years ago
3
Add bam file to apollo

#25 mpoelchau closed 4 years ago
3
Change default name prefix

#24 mpoelchau closed 4 years ago
13
Add bigwig creation step

#23 mpoelchau closed 4 years ago
4
update usage of download_sra_metadata.py

#22 hsiaoyi0504 opened 5 years ago
0
handle the case that no argument is supplied

#21 hsiaoyi0504 opened 5 years ago
0
add uninstallation information

#20 hsiaoyi0504 closed 5 years ago
0
Download sra files

#19 hsiaoyi0504 closed 5 years ago
1
test installation in Travis

#18 hsiaoyi0504 closed 5 years ago
0
add one more example

#17 hsiaoyi0504 closed 5 years ago
0
document update

#16 hsiaoyi0504 closed 5 years ago
0
Incorporated tests into CI

#15 hsiaoyi0504 opened 5 years ago
0
Document update

#14 hsiaoyi0504 closed 5 years ago
0
fix indentation

#13 hsiaoyi0504 closed 5 years ago
0